8.4 EMP_enrich_netplot

The module EMP_enrich_netplot is designed for the enrichment result.

8.4.1 Netplot of KEGG enrichment result

The module EMP_enrich_netplot inherits the cnetplot from the enrichplot package, which can visualize the results of enrichment analysis.

🏷️Example：

MAE |>
  EMP_assay_extract(experiment = 'geno_ec') |>
  EMP_diff_analysis(method='DESeq2',.formula = ~Group) |>
  EMP_enrich_analysis(condition = pvalue<0.05,keyType ='ec',KEGG_Type = 'KEGG',
                      pvalueCutoff=0.05,species = 'all',combineGroup = FALSE) |>
  EMP_enrich_netplot()